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Differentially expressed miRNAs in premature infants with retinopathy-a bioinformatics analysis

更新时间:2016-07-05

INTRODUCTION

Retinopathy of prematurity (ROP) is a potentially preventable neurovascular disorder, which is estimated to make 20 000 infants blind or severely visually impaired each year worldwide[1]. No matter the gestational age at birth,and no matter the ultimate severity of the retinopathy, the onset of ROP seems to start at approximately 32wk gestation[2]. With the maternal age growing, very premature infants gradually increased. Therefore, patients with ROP become common in clinical practice despite developed neonatal care technology and good management of oxygen inhalation. Although the assistance of cryotherapy, laser photocoagulation and antivascular endothelial growth factors (VEGF) drugs has resulted in a remarkable reduction in mobility and improved prognosis,treatment of this dis ease has remained difficult. The key problem for pediatricians is the physiopathologic mechanism of ROP remains unclear yet.

考虑到三峡水位差往往达到30m,因此本文设计两个前沿沉箱基础以及6个钢管桁架模块。其中,沉箱基础1顶高程为182m,沉箱基础2顶高程为184.5m,码头面层高程为206.5m。由于船舶将直接停靠在临水侧的钢管桁架上,不另外设置靠船构件。沉箱结构和钢管桁架结构分别见图1与图2。

第三期(1640-1645):崇祯十三年至弘光元年。祁彪佳完成寓园主要景点后,由于祁母去世节哀守丧,加之山阴、会稽一带江南饥荒波及,他无心力、财力再对寓园继续大规模的营造,只能建一些楼廊小阁,砌池、整花石,栽种树木花草。如崇祯十三年十一月二十四日,为新建成的茅庵命名为“竺(竹)深留客处”[4]第6册39;崇祯十四年五月二十一日“督庄奴卸屋为古樟砰一小亭”[4]第7册38,六月十八日,“古樟砰一阁已稍有成规,登而憩之,为园中最幽胜地”[4]第7册43。因而三期工程“深在思致,妙在情趣”[5]8,情致所至,随意点染。

“仓廪实,天下安”,粮食是国家治国安邦的根本。耕地更是保障粮食生产的重要前提与保障,而土地整治是补充耕地最直接有效的途径,是推进乡村振兴的有力手段。为保证耕地数量的同时保障耕地质量,在土地整治开发建设过程中,土壤环境质量动态监测、土地利用科学规划及整治中各类信息收集分析存储,是当前一定时期内土地整治管理过程中的重要工作。同时,随着计算机科学技术的发展以及大数据时代的到来,科技创新与信息技术发展息息相关,在土地整治中也得到了较多的应用,极大地提高了土地整治各阶段的效率。本文介绍了信息化技术在土地整治工程中的应用,旨在推广信息化技术的同时,提高土地整治质量,构建生态和谐土地。

microRNAs (miRNAs) are small non-coding RNAs of 18-26 nucleotides in length that regulate gene expression through sequence-specific base pairing with target miRNAs. miRNA has been reported to be important in various biological processes including vascular angiogenesis, cell growth, embryonic development, cell proliferation, tissue differentiation and apoptosis[3-6]. It is well documented that miRNAs could regulate vascular angiogenesis[7]. And the regulation of VEGF, IGF-2 and HIF-1α by miRNA-126 is associated with retinal vascular angiogenesis under conditions of oxygen-induced retinopathy(OIR)[8], which suggested miRNA’s possible role in ROP.

smooth muscle cells function through β-catenin signaling[29].So, though obvious evidences are missing, it also suggested the possible roles of miRNA-128-3p and its lncRNA in the aspect of angiogenesis in ROP.

miRNA-lncRNA Regulatory Relationship Prediction StarBase v2.0 (http://starbase.sysu.edu.cn/)[19] database is used to identify the RNA-RNA and RNA-protein interaction networks systematically (miRNA-pseudogene, miRNA-lncRNA, miRNA-mRNA, miRNA-circRNA and protein-RNA) from 108 CLIP-Seq (CLASH, PAR-CLIP, iCLIP,HITS-CLIP) generated datasets. ChIPBase (http://deepbase.sysu.edu.cn/chipbase/)[20] is a database for annotating and discovering trans criptional regulatory relationships of miRNAs and lncRNAs binding maps from ChIP-Seq data. All the interaction networks of miRNA-lncRNA in our study were downloaded from starBase v2.0 and ChIPBase. The subnetworks related to the differentially expressed miRNAs were further selected.

Because miRNA sequence is well conservative among species,it gives us a good opportunity to look for common significant miRNAs by using these raw data. In the present study, we took advantage of previous data to analyze the miRNA expression pro file between ROP group and control group. Besides, basedon the miRNAs with differential expression, we predicted the relevant target genes, lncRNA and circRNA. In addition, we performed further functional enrichment analysis to analyze the functions of target genes. We aim to explore the involvement of miR NAs in the progression of ROP.

Table 1 Differentially expressed miRNAs and target genes

miRNA Direction Fold changes Sequence Location Target genes miR-9-5p/9a-5p Up 2.09/5.94 ucuuugguuaucuagcuguauga(mmu)ucuuugguuaucuagcuguauga(rno)ucuuugguuaucuagcuguauga(hsa)chr1: 156420341-156420429[-](hsa) 1101 miR-128-3p/128-3p Down 2.15/2.54 ucacagugaaccggucucuuu(mmu)ucacagugaaccggucucuuu(rno)ucacagugaaccggucucuuu(hsa)chr2: 135665397-135665478[+](hsa) 670 miR-377-3p/377-3p Down 2.00/3.11 aucacacaaaggcaacuuuugu(mmu)ugaaucacacaaaggcaacuuuu(rno)aucacacaaaggcaacuuuugu(hsa)chr14: 101062050-101062118[+](hsa) 613

SUBJECTS AND METHODS

Data Source The data in our study came from the study of Wang et al[9] and Zhao et al[10]. Wang et al[9] analyzed the miRNA profile data of retinal tissue between 40 C57BL/6 neonatal mice with ROP and 40 without ROP (controls)on postnatal day 17. Finally, 67 differentially expressed miRNAs were identified. Zhao et al[10] compared miRNAs in neonatal Sprague-Dawley rats. They found 66 differentially expressed plasma miRNAs by deep sequencing technology on postnatal day 14. Based on the above data, we perform a stricter screening standard which is the significant miRNAs are selected from the intersection of the above two articles (Wang et al[9] and Zhao et al[10]). And fold change must fulfill greater than two in both studies. In addition, miRNA sequence must be well conservative between human and rodent. After screening,only 1 up-regulated and 1 down-regulated miRNAs passed the test, and were further selected into this study (Table 1). Based on these findings, we try to identify the roles of miRNA in ROP.Target Gene Prediction The target genes of miRNAs were predicted by following seven published databases, including miRanda (http://microrna.sanger.ac.uk)[11], Mir-Target2(http://nar.oxfordjournals.org/cgi/content/abstract/34/5/1646)[12],PicTar (http://pictar.bio.nyu.edu)[13], Probability of Interaction by Target Accessibility (PITA; http://genie.weizmann.ac.il/pubs/mir07)[14], Target Scan (http://targetscan.org)[15],miRecords (http://miRecords.umn.edu/miRecords)[16], Mirwalk(http://mirwalk.uni-hd.de/)[17]. The miRNA-gene pair would be reserved when it was predicted by no less than four of the databases above.

Functional Enrichment Analysis The Database for Annotation, Visualization and Integrated Discovery (DAVID;http://david.niaid.nih.gov)[18] has been developed for mapping genes to associated pathways and Gene Ontology (GO) terms.We performed GO and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses to analyze the target genes using the DAVID online database. P<0.05 was considered as significance.

miRNA-circRNA Regulatory Relationship Prediction In our study, all the interaction networks of miRNA-circRNA were analyzed and downloaded from starBase v2.0, and then, the sub-networks related to the differentially expressed miRNAs were selected at last.

By carefully reviewing the literature in databases (PubMed and Embase), there’re only two miRNA profile papers reporting identification of differential miRNAs in ROP newborns.One of them is our previous report[9], with the assistance of microarrays and subsequent reverse transcription-polymerase chain reaction (RT-PCR), we first revealed the involvement of miRNA in ROP by screening miRNAs expression in retinal tissue of mice. In another miRNA article, Zhao et al[10] described an initial use of deep sequencing to comprehensively profile miRNAs in the plasma of ROP rats induced by hyperoxia.

单次照射3 d后,处死大鼠取0.5 cm小肠组织,4%福尔马林液固定组织,交由病理科制作组织切片,常规HE染色,显微镜下测量绒毛高度、黏膜厚度。

RESULTS

Function Enrichment Analysis of hsa-miRNA-9-5p and hsa-miRNA-128-3p Target Genes The target genes of hsamiRNA-9-5p and hsa-miRNA-128-3p were performed GO enrichment analysis and the result was shown in Table 2. The target genes of hsa-miRNA-9-5p were mainly enriched in negative regulation of transcription from RNA polymerase II promoter. And the target genes of hsa-miRNA-128-3p were mainly enriched in positive regulation of transcription, DNA-templated.

Differentially Expressed miRNAs and Target Genes Three differentially expressed miRNAs passed the preliminary screening (fold change >2 in both articles), including 1 upregulated and 2 down-regulated ones (Table 1). However,the sequence of miRNA-377-3p is not conservative among species. So, only miRNA-9-5p (miRNA-9a-5p) and miRNA-128-3p were included into our further study. The target genes were reserved when it was predicted by not less than 4 of the databases above.

Table 2 GO analysis of hsa-miRNA-9-5p and hsa-miRNA-128-3p target genes

miRNA-9-5p Count P Benjamini miRNA-128-3p Count P Benjamini Negative regulation of transcription from RNA polymerase II promoter 39 4.0E-5 8.6E-2 Positive regulation of transcription, DNA-templated 22 2.6E-5 4.8E-2 Regulation of membrane potential 11 2.4E-4 2.3E-1 Positive regulation of transcription from RNA polymerase II promoter 35 1.4E-4 1.2E-1 Cell adhesion 18 7.8E-4 4.4E-1 Multicellular organism growth 11 1.5E-4 9.1E-2 Positive regulation of nuclear-transcribed mRNA poly(A) tail shortening 5 1.6E-3 6.0E-1 Axon guidance 12 1.9E-4 8.5E-2 Proteasome-mediated ubiquitin-dependent protein catabolic process Positive regulation of proteasomal ubiquitindependent protein catabolic process 14 4.3E-3 8.6E-1 Transcription, DNA-templated 26 4.4E-4 1.5E-1 9 4.4E-3 8.0E-1 Heart development 12 6.3E-4 1.8E-1 Regulation of synaptic vesicle exocytosis 4 6.0E-3 8.5E-1 Peptidyl-serine phosphorylation 12 7.5E-4 1.8E-1 Negative regulation of epidermal growth factor-activated receptor activity 4 8.7E-3 9.1E-1 Negative regulation of transcription from RNA polymerase II promoter 27 8.1E-4 1.7E-1 Cellular response to starvation 7 8.8E-3 8.9E-1 Positive regulation of ubiquitinprotein transferase activity 5 1.0E-3 1.9E-1 Positive regulation of transcription from RNA polymerase II promoter 40 8.9E-3 8.6E-1 Positive regulation of angiogenesis 10 1.5E-3 2.5E-1

Table 3 Pathway enrichment analysis of hsa-miRNA-9-5p and hsa-miRNA-128-3p target genes

miRNA-9-5p Count P Benjamini miRNA-128-3p Count P Benjamini Thyroid hormone signaling pathway 15 8.3E-4 1.7E-1 Signaling pathways regulating pluripotency of stem cells 15 1.5E-4 3.1E-2 Transcriptional misregulation in cancer 18 9.9E-4 1.1E-1 Pathways in cancer 26 9.5E-4 9.7E-2 Protein digestion and absorption 12 1.9E-3 1.3E-1 Transcriptional misregulation in cancer 15 1.3E-3 8.8E-2 Pathways in cancer 32 3.2E-3 1.6E-1 FoxO signaling pathway 12 3.3E-3 1.6E-1 Endocytosis 23 3.5E-3 1.5E-1 AMPK signaling pathway 11 5.5E-3 2.1E-1 Neurotrophin signaling pathway 14 3.9E-3 1.4E-1 RNA degradation 8 9.9E-3 3.0E-1 Ras signaling pathway 20 7.2E-3 2.1E-1 mRNA surveillance pathway 9 1.0E-2 2.8E-1 Glycosaminoglycan biosynthesischondroitin sulfate / dermatan sulfate 5 1.3E-2 3.1E-1 GABAergic synapse 8 1.7E-2 3.7E-1 Ubiquitin mediated proteolysis 14 1.3E-2 2.8E-1 TGF-beta signaling pathway 8 1.9E-2 3.7E-1 miRNAs in cancer 14 1.4E-2 2.7E-1 MAPK signaling pathway 16 2.1E-2 3.7E-1 Vasopressin-regulated water reabsorption 7 1.5E-2 2.6E-1 ErbB signaling pathway 8 2.1E-2 3.4E-1 MAPK signaling pathway 20 2.8E-2 4.1E-1 Rap1 signaling pathway 14 2.2E-2 3.3E-1 AMPK signaling pathway 12 2.9E-2 4.0E-1 MicroRNAs in cancer 16 2.3E-2 3.2E-1 Renal cell carcinoma 8 3.3E-2 4.2E-1 PI3K-Akt signaling pathway 19 2.9E-2 3.6E-1 Focal adhesion 17 3.6E-2 4.2E-1 GnRH signaling pathway 8 3.5E-2 3.9E-1 Dorso-ventral axis formation 5 3.7E-2 4.1E-1 Estrogen signaling pathway 8 3.5E-2 3.9E-1 Regulation of actin cytoskeleton 17 4.0E-2 4.2E-1 Ubiquitin mediated proteolysis 10 3.8E-2 4.1E-1 Insulin secretion 9 4.7E-2 4.5E-1 Neurotrophin signaling pathway 9 4.7E-2 4.5E-1

Pathway Enrichment Analysis of hsa-miRNA-9-5p and hsa-miRNA-128-3p Target Genes The signaling pathways enriched by the target genes of hsa-miRNA-9-5p and hsamiRNA-128-3p were shown in Table 3. The target genes of hsa-miRNA-9-5p were enriched in Ras signaling pathway,cancer pathway, MAPK signaling pathway. And the tar get genes of hsa-miRNA-128-3p were mainly enriched in TGF-β signaling pathway and PI3K-Akt signaling pathway.

LncRNAs Targeted by hsa-miRNA-9-5p and hsa-miRNA-128-3p From the predicted lncRNAs of hsa-miRNA-9-5p and hsa-miRNA-128-3p, we found that some lncRNAs were regulated by both miRNAs, such as RP6-24A23.7. In addition,some common target genes regulated by both lncRNA and miRNA were found, such as IGF2BP1, QKI and TNRC6 in hsa-miRNA-9-5p; such as QKI, UPF1 and SFRS1 in hsamiRNA-128-3p (Table 4).

Table 4 LncRNAs and target genes targeted by hsa-miRNA-9-5p and hsa-miRNA-128-3p

lnc RNA lnc RNA HNRNPU-AS1 1 IGF2BP1;QKI;TNRC6; LIN28B; LIN28;SFRS1 CTD-2319I12.1 1 SFRS1; UPF1 RP11-793H13.8 1 IGF2BP1; LIN28B; LIN28; C17ORF85;SFRS1 POLDIP2 1 FXR2; LIN28; UPF1 RP11-299M14.2 1 / OIP5-AS1 1 FXR2; LIN28; SFRS1; UPF1 AC093642.3 1 / RP4-717I23.3 3 UPF1 RP11-170L3.8 1 IGF2BP1; TNRC6; LIN28B; LIN28;SFRS1 SNHG16 1 QKI; FXR2; LIN28;C17ORF85; SFRS1; UPF1 XIST 3 TNRC6; LIN28; C17ORF85; IGF2BP2;SFRS1;LIN28B RP5-1120P11.1 1 UPF1 SENP3-EIF4A1 1 IGF2BP2;QKI; LIN28B; LIN28; SFRS1 RP11-325K4.3 1 /PTCHD3P1 1 LIN28B AC084219.4 1 UPF1 AC005076.5 1 LIN28B AC083843.1 1 UPF1 AC007246.3 1 / TP73-AS1 1 QKI; UPF1 UHRF1 1 IGF2BP2; LIN28; SFRS1 ZNRD1-AS1 1 UPF1 PCBP1-AS1 1 LIN28B; LIN28; SFRS1 MIR497HG 3 /RP6-24A23.7 1 IGF2BP2;QKI; TNRC6; LIN28B GAS5 1 UPF1; FXR2; LIN28; C17ORF85;SFRS1 ZNRD1-AS1 2 LIN28B AC068610.3 1 /LINC00665 1 LIN28B; LIN28 RP11-421L21.3 3 UPF1 RP11-519M16.1 1 / KCNQ1OT1 1 UPF1 RP11-511P7.2 1 / RP11-158K1.3 1 UPF1 MAP3K14 1 / DCP1A 1 FXR2; LIN28; SFRS1; UPF1 RP1-37E16.12 1 IGF2BP2; LIN28B; LIN28; C17ORF85; SFRS1 ZNF252P-AS1 1 /CTB-25J19.9 1 IGF2BP2; LIN28B CTC-444N24.11 1 QKI; FXR2; UPF1 RP11-473I1.10 1 IGF2BP2; TNRC6; LIN28B; LIN28 RP11-334J6.4 1 LIN28 RP13-507I23.1 1 / SNORD62A 1 UPF1 HCG18 1 LIN28B; IGF2BP2; LIN28 XXbac-B461K10.4 1 UPF1 TUG1 1 TNRC6; SFRS1; IGF2BP2; LIN28B; LIN28 LINC00339 1 UPF1 RP11-96D1.10 1 IGF2BP2; TNRC6; LIN28B; LIN28 CTB-89H12.4 1 FXR2; LIN28; SFRS1; UPF1 AL163636.6 1 LIN28B hsa-mir-210 1 /SNHG7 1 IGF2BP2; SFRS1; LIN28B; LIN28 RP11-151N17.2 1 UPF1 RP11-64K12.2 1 IGF2BP2; LIN28B RP6-24A23.7 2 QKI; FXR2 MAGI1-IT1 1 / RP1-178F10.3 1 FXR2; LIN28; UPF1 RP11-622K12.1 1 IGF2BP2; LIN28B; LIN28 CTA-204B4.6 2 QKI; FXR2; UPF1 ZNF252P-AS1 1 / AC004696.2 1 /NEFL 3 IGF2BP2; TNRC6; LIN28B; LIN28; SFRS1 AC090587.2 1 UPF1 NEAT1 1 TNRC6;QKI; SFRS1; IGF2BP2; LIN28B LA16c-306E5.2 1 FXR2; SFRS1; UPF1 RP11-658F2.8 1 IGF2BP2 PVT1 1 LIN28; SFRS1; UPF1 AC017048.3 1 IGF2BP2 RP11-24B19.3 1 FXR2; UPF1 RP5-1043L13.1 1 /HCP5 1 UPF1

It’s worthy noting that PI3K-Akt signaling pathway and TGF-β signaling pathway passed enrichment analysis of hsamiRNA-128-3p. Di et al[30] found CCN1/Cyr61-PI3K/AKT signaling promotes retinal neovascularization in oxygeninduced retinopathy. TGF-β signaling is also essential for the differentiation of retinal pericytes during vascular development of the retina. Kimsa et al[31] once found treatment of proliferative vitreoretinopathy is associated with processes regulated by TGF-β, such as inflammation, proliferation,epithelial-mesenchymal transition, and fi brosis.

DISCUSSION

ROP, which afflicts premature infants often, is characterized by abnormal retinal vasculature. Onset of ROP occurs when the neurosensory retina is quite immature. Its pathogenesis has not been very clear yet. But the effect of oxygen toxicityon the retina on the immature vasculature has been reported in two important stages: 1) vasoconstrictive stage: this occurs during exposure to hyperoxia and there is also suppression of the normal anterior ward vascularization of the retina.This mechanism of vasoconstrictive and obliterative effect of oxygen is often seen in the developing retinal vessels; 2)vasoproliferative stage: it involves dilatation and tortuosity of the existing larger vessels with neovascularization and proliferation of new vessels into the vitreous[21]. Consequently,the irreversible vascularization is the core mechanism of ROP.In the past several years, few reports have shown that miRNA expression is associated with ocular physiologic and pathological processes and displays tissue- and spatiotemporal specific expression[22-23]. By our further analysis, miRNA-128-3p and miRNA-9-5p are the only up and down regulated miRNAs in ROP among reported profile studies[9-10]. As for miRNA-128-3p, which received less investigation, was generally reported in hepatocellular carcinoma[24] and also involved in is chemia-induced brain injury[25]. About its related lncRNA, POLDIP2 is a molecule that has been shown to be involved in cell migration of vascular cells and angiogenesis[26].It’s also involved in a variety of processes of organ fibrosis lesions[27]. Another lncRNA-GAS5 seems play an important role in angiogenesis and migration, in colorectal cancer it acts as tumor suppressor by inhibiting IL-10 and VEGF expression[28].Mechanistically, GAS5 regulated endothelial cells and vascular

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Table 5 circRNAs interaction with hsa-miRNA-9-5p and has-miRNA-128-3p

circ RNA circRNA ZNF280C_hsa_circ_001211 1 SIAE_hsa_circ_002083 1 ACBD6_hsa_circ_000547 1 PHIP_hsa_circ_001319 1 DYM_hsa_circ_001852 1 SLC25A3_hsa_circ_001372 1 MRPS15_hsa_circ_001377 1 ATP7A_hsa_circ_001615 1 WDR48_hsa_circ_000939 1 UBQLN1_hsa_circ_000998 1 GPBP1L1_hsa_circ_001477 1 EIF3B_hsa_circ_001977 1 C2orf29_hsa_circ_000665 1 PHF20_hsa_circ_001403 1 SENP6_hsa_circ_000436 1 EEF2_hsa_circ_001399 1 FAT1_hsa_circ_000713 1 ELP3_hsa_circ_000758 1 NR3C1_hsa_circ_000420 1 AFF1_hsa_circ_000009 1 SPECC1_hsa_circ_000013 1 WDR48_hsa_circ_000939 1 LMNB2_hsa_circ_001499 1 ANKRD17_hsa_circ_001160 1 NOLC1_hsa_circ_000099 1 TCONS_l2_00022231_hsa_circ_000724 1 ING5_hsa_circ_000922 1 FAM120A_hsa_circ_001209 1 EIF2AK3_hsa_circ_001128 1 PLCL2_hsa_circ_001828 1 MYB_hsa_circ_001864 1 TUBA1B_hsa_circ_002179 1 WDR48_hsa_circ_001515 1 FAT1_hsa_circ_000713 1 LNPEP_hsa_circ_000735 1 MRPS35_hsa_circ_001042 1 NFATC1_hsa_circ_001267 1 PSMD1_hsa_circ_001736 1 NFATC3_hsa_circ_002176 1 ZNF780B_hsa_circ_002015 1 MGA_hsa_circ_001756 1 RBM5_hsa_circ_001647 1 TNFRSF21_hsa_circ_001713 1 NEK9_hsa_circ_000182 1 SEC11A_hsa_circ_002047 1 CTBP1_hsa_circ_001895 1 PCDH9_hsa_circ_001561 1 EEF2_hsa_circ_000254 1 MND1_hsa_circ_001152 1 C18orf1_hsa_circ_001090 1 ARHGAP35_hsa_circ_001101 1 ANKRD44_hsa_circ_001698 1 ZNF264_hsa_circ_001634 1 VASP_hsa_circ_000899 1 PIKFYVE_hsa_circ_002114 1 CSDE1_hsa_circ_001457 1 ISY1_hsa_circ_001859 1 ZNF394_hsa_circ_002103 1 CDK13_hsa_circ_001778 1 PRRC2B_hsa_circ_000761 1 PIKFYVE_hsa_circ_001734 1 SNHG7_hsa_circ_001978 1

circRNAs Interaction with hsa-miRNA-9-5p and hsamiRNA-128-3p As for the predicted circRNAs of hsamiRNA-9-5p and hsa-miRNA-128-3p, we finally found 35 and 27 candidates from StarBase including ZNF280C_hsa_circ_001211, SIAE_hsa_circ_002083 and etc (Table 5).

The sequence of miRNA-9-5p is conserved among species and less reported in the previous references. Inspite of the abundant expression of the brain-specific miRNA (miRNA-9-5p/3p) in both proliferating and postmitotic neurons, most functional studies have focused on their role in neuronal development. Sim et al[32] found miRNA-9-5p has an important role in hippocampal synaptic plasticity and memory.In addition, miRNA-9-5p dysregulation is a hallmark of many neurodegenerative disorders, including those involving the retina. It has been described differentially expressed in the RHO-P347S mouse retina, a model for a common form of inherited blindness[33].

As for the lncRNA of miRNA-9-5p, NEFL and UHRF1 have been studied the most widely. Kim et al[34] found that mRNA levels of previously described ganglion cell markers, e.g.NEFL was highly enriched in the isolated retinal ganglion cell layer. Liu et al[35] found NEFL is correlated with human corneal fi broblasts in ocular in fl ammatory diseases. These data provide the first evidence that NEFL and UHRF1 function are required for retina development and perfection. Enrichment analysis of miRNA-9-5p was mainly located in MAPK signaling pathway.For MAPK signaling pathway, the reactive oxygen speciesdependent phosphorylation of EGFR/MAPK is an important signaling pathway for Aurano fi n-induced inhibition of retinal pigment epithelium cell survival, and may have the potential for treatment of abnormal survival of retinal pigment epithelia cells in proliferative vitreoretinopathy[36].

4)联合速度控制的使用,减少了制动器使用频率,从而降低了车辆制动噪声和摩擦材料的排放,有利于保护环境。

In conclusion, our data provided a bioinformatics analysis of differentially expressed miRNAs which are involved in ROP. hsa-miRNA-128-3p and hsa-miRNA-9-5p showed significantly differential expression between ROP group and control group. LncRNA of POLDIP2, GAS5, NEFL and UHRF1, circRNA of ZNF280C_hsa_circ_001211 and SIAE_hsa_circ_002083, tar get gene of QKI and enrichment analysis of TGF-β signaling pathway, PI3K-Akt signaling pathway and MAPK signaling pathway may play important roles in the prog ress of ROP. Here, we want to remind readers to pay attention to the physiological and pathological differences between animal model and human. Therefore, further genetic and experimental studies with larger sample size are still needed to con fi rm these results.

ACKNOWLEDGEMENTS

Conflicts of Interest: Yang Y, None; Pan JJ, None; Zhou XG, None; Zhou XY, None; Cheng R, None.

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Yang Yang,Jing-Jing Pan,Xiao-Guang Zhou,Xiao-Yu Zhou,Rui Cheng
《International Journal of Ophthalmology》2018年第5期文献

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